bio-loop

Core skills library for Claude Code: TDD, debugging, collaboration patterns, and proven techniques

15 skills · hooks

HADS (Human-AI Document Standard) — semantic tagging convention for docs that work for both humans and AI models — plus the grounded-vault pattern for provenance-linked, drift-checked knowledge stores.

2 skills

Evidence-backed BioPharma research workflows over Maven Bio's drug, trial, company, and deal knowledge graph. Skills for competitive pipelines, indication landscapes, asset profiles, deal and financing activity, and evidence synthesis grounded in FDA, SEC, clinical, and press sources. Requires a Maven Bio account.

16 skills · 1 agent · 1 MCP server

Study companion for the Deep Learning textbook by Goodfellow, Bengio & Courville (MIT Press, 2016), free to read at deeplearningbook.org. Twenty chapter files, a glossary, patterns and a cheatsheet index the whole book, and a delta reference dates it against 2026 practice with per-claim confidence levels: double descent qualifying the U-curve, AdamW splitting weight decay from L2, transformers displacing Chapter 10's recurrence, diffusion growing out of Chapter 18's score matching. Four stdlib tools make it executable — a prerequisite-closed reading-path planner that refuses goals the book does not cover, a training diagnostic running Chapter 11's rules in priority order so a NaN is never reported as overfitting, a capacity planner that ranks 'shrink the model' last when overparameterized, and a parameter/FLOP/activation-memory calculator that refuses a stack whose shapes do not connect. A companion, not a compilation: the book is copyrighted, so nothing here reproduces its text.

1 skill · 3 commands · 1 agent

Remove multi-vendor AI provenance marks from text, images, documents, and media. Bundles the remove-ai-marks and clean-user-facing-text skills.

2 skills · hooks

Comprehensive context engineering and harness engineering skills for production-grade AI agent systems: fundamentals, degradation patterns, compression, optimization, self-managed context (model-controlled live context editing), multi-agent coordination, long-horizon prompting (pseudo-formal task briefs for long-running and parallel agents), memory systems, tool design, filesystem context, hosted agents, evaluation, autonomous harnesses, self-improvement loops (RSI, meta-harnesses, evolutionary scaffold search), latent briefing (KV cache sharing between agents), project development, and cognitive architecture. Ships with a researcher operating system (rubrics, mechanism registry, claim provenance, run state machine, adversarial benchmarks, continuous loop).

19 skills