claudecodex

single-cell-research

Dataset-derived marker prompts and structured research report processing.

6 on GitHubby Musser Labv0.1.1updated 20 days agoProductivity
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Plugin single-cell-research from marketplace musser-lab in MusserLab/lab-claude-skills. Commands read from the repo's manifest — 19 days ago.

What it installs

Skills (2)

  • deep-research-genelist

    Prepare dataset-derived marker lists and deep research prompts for scRNAseq cell type annotation. Use when the user invokes /gene-list-deep-research or asks to generate a deep research prompt from a gene list (cluster markers, WGCNA module, DE gene list). Produces a research-level prompt with struct

  • deep-research-reports

    Process deep research report outputs for scRNAseq cell type annotation and non-metazoan gene characterization. Use when the user invokes /process-deep-research or asks to clean, convert to PDF/HTML, parse, or compile deep research reports from ChatGPT or Claude. Handles artifact removal, PDF/HTML ge

View source on GitHub

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