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UC Davis Proteomics Core skills for Claude — agentic mass-spec search + differential expression.
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UC Davis Proteomics Core pipeline — end-to-end proteomics search + differential expression from raw .raw/.d/.mzML files (DIA-NN / Sage, limpa/limma). Auto-installs its toolchain, derives search parameters from the data type, writes a biological analysis report and a full reproducibility bundle, and packages results into tidy session folders.
1 skill · hooks
SANDBOX copy of the UC Davis Proteomics Core pipeline (forked from stable v2.4.3). For developing new capability -- phosphosite analysis and the DE-LIMP visualisations -- without risking the skill that runs real searches. Not for production analyses.
1 skill
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