claudecodex

foundry-skills

Galaxy MCP server config and curated Galaxy skills packaged for Claude Code, Codex, Antigravity and Pi

1 on GitHubupdated 1 month ago

Not in a marketplace yet, so it loads for one session with --plugin-dir.

Plugin foundry-skills in galaxyproject/agentic-plugins. Commands read from the repo's manifest — 1 month ago.

What it installs

Skills (59)

  • advance-galaxy-draft-step
  • apply-galaxy-workflow-changeset
  • author-galaxy-tool-wrapper
  • changeset-to-galaxy-test-plan
  • compare-against-iwc-exemplar
  • convert-nfcore-module-to-galaxy-tool
  • cwl-summary-to-galaxy-data-flow
  • cwl-summary-to-galaxy-interface
  • cwl-summary-to-galaxy-template
  • cwl-test-to-galaxy-test-plan
  • cwl-to-test-data
  • debug-cwl-workflow-output
  • debug-galaxy-workflow-output
  • discover-shed-tool
  • find-test-data
  • freeform-summary-to-cwl-design
  • freeform-summary-to-galaxy-data-flow
  • freeform-summary-to-galaxy-interface
  • freeform-summary-to-galaxy-template
  • freeform-summary-to-galaxy-test-plan
  • implement-cwl-tool-step
  • implement-cwl-workflow-test
  • implement-galaxy-tool-step
  • implement-galaxy-workflow-test
  • interview-to-freeform-summary
  • interview-to-galaxy-workflow-changeset
  • mature-galaxy-workflow-for-iwc
  • nextflow-summary-to-cwl-data-flow
  • nextflow-summary-to-cwl-interface
  • nextflow-summary-to-galaxy-data-flow
  • nextflow-summary-to-galaxy-interface
  • nextflow-summary-to-galaxy-reference-data
  • nextflow-summary-to-galaxy-template
  • nextflow-test-to-cwl-test-plan
  • nextflow-test-to-galaxy-test-plan
  • nextflow-to-test-data
  • paper-to-test-data
  • pipeline-cwl-to-galaxy
  • pipeline-galaxy-workflow-maturation
  • pipeline-galaxy-workflow-review
  • pipeline-interview-to-galaxy
  • pipeline-nextflow-to-cwl
  • pipeline-nextflow-to-galaxy
  • pipeline-paper-to-cwl
  • pipeline-paper-to-galaxy
  • pipeline-update-interview-to-galaxy
  • repair-galaxy-draft-topology
  • report-foundry-run-feedback
  • review-galaxy-workflow
  • run-workflow-test
  • summarize-cwl-tool
  • summarize-cwl
  • summarize-galaxy-tool
  • summarize-galaxy-workflow
  • summarize-nextflow
  • summarize-paper
  • summary-to-cwl-template
  • validate-cwl
  • validate-galaxy-workflow
View source on GitHub

Problems found in this repo's manifests

  • .claude-plugin/marketplace.json is not valid JSON
  • .agents/plugins/marketplace.json is not valid JSON

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claude & codex plugins4 plugins