PIASO single-cell omics ecosystem: scanpy-free pipeline, marker genes (COSG/COSGR), gene-set scoring, annotation (PIASOmarkerDB), ligand-receptor (SCALAR/LARIS), regulons (cytorete), .cytome streaming, Emergene.
Plugin piaso from marketplace PIASO-for-agents in genecell/PIASO-for-agents. Commands read from the repo's manifest — 1 month ago.
piasoPIASO single-cell omics ecosystem (scRNA-seq, spatial; Python + R). Use for: marker gene identification / find markers for clusters; ligand-receptor analysis / cell-cell communication (single-cell or spatial); gene-set / pathway scoring; cell type annotation / label transfer; marker-gene-guided DR (
General life-sciences research workflows with query routing, evidence synthesis, and optional parallel subagent analysis across genetics, omics, biology, chemistry, structure, clinical evidence, and public dataset discovery.
50 skills
Query the KEGG bioinformatics database — pathways, genes, compounds, drugs, enzymes, diseases, reactions, and more via 34 read-only MCP tools. No API key required.
1 skill · 3 commands · 1 agent · 1 MCP server
2,700+ scientific tools (PubMed, UniProt, PubChem, TCGA, FAERS, ClinicalTrials.gov, etc.) + 160+ research skills + MCP server + research slash commands.
163 skills · 8 commands · 1 agent · 1 MCP server · hooks
SimBiology and Statistics and Machine Learning Toolbox.
3 skills
100+ bioinformatics Agent Skills: pharmacogenomics, clinical variant interpretation, GWAS and PRS, ancestry, RNA-seq and single-cell, metagenomics, proteomics, methylation clocks, nf-core pipeline wrappers. Many run deterministically from the CLI with demo data and write a reproducibility bundle. Local-first, privacy-focused.
111 skills · 4 commands
Read-only biomedical search and evidence retrieval across BioMCP's CLI command grammar (genes, variants, trials, articles, drugs, diseases, pathways, proteins, and more). Wires the local BioMCP MCP server.
2 skills
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