claudecodex

langslice

Skills for setting up a LangSlice registration job, and registration subagents (CLI and scripting variants) that register one brain each

6 on GitHubby LangSlicev0.1.0BSD-3-Clauseupdated todayScientific Research
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Plugin langslice from marketplace langslice in greenpolo/LangSlice. Commands read from the repo's manifest — today.

This plugin runs code on your machine — its hooks fire automatically on events like tool use and it starts local MCP servers. The exact commands are listed below; read them before installing.

What it installs

Skills (3)

  • abba

    Work with ABBA (Aligning Big Brains and Atlases, in Fiji) from a coding agent: drive a running ABBA through its MCP server (abba-mcp), import section images, save and load state, export registrations and regions, continue a LangSlice job started from ABBA, and bring an ABBA registration into LangSli

  • register-brain

    Set up and run a LangSlice registration of one brain (a folder of histology section images to a BrainGlobe atlas): create the job with the user's choices, hand it to a registration subagent, then check and export the results. Use when the user asks to register, align or place brain sections in an at

  • setup

    Set up LangSlice in Claude Code once the LangSlice plugin is installed: find the langslice program, put its folder on PATH so the app can start LangSlice's MCP server, and let LangSlice's tools run without asking. Use when the user asks to set up LangSlice or connect LangSlice, or when LangSlice's t

Subagents (2)

  • register-scripting

    Registers ONE brain (one LangSlice job folder) with the `langslice-job` CLI and scripts that use the LangSlice Python library in the job folder. Needs Bash, Read, Write, Edit and the web. Launch it with the job folder; it does nothing else.

  • register

    Registers ONE brain (one LangSlice job folder) with the LangSlice MCP tools, whose replies carry the pictures. Launch it with the job folder; it does nothing else.

MCP servers (1)

  • langslice

    runs: langslice mcp

Hooks (1)

  • SubagentStop

    langslice session-end --harness claude-code

View source on GitHub

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