claude

bioinformatics

Refactors of analysis pipelines that must keep results equal: baseline frozen, steps mapped, outputs compared at a stated tolerance, differences explained apart from unexplained ones.

0 on GitHubby modootodayv0.2.0MITupdated 24 days ago
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Plugin bioinformatics from marketplace modootoday in modootoday/marketplace. Commands read from the repo's manifest — 23 days ago.

What it installs

Skills (4)

  • analysis-pipeline-refactor-parity

    Plan and accept a bioinformatics refactor that must keep results equal - replacing a hand-written analysis step with an official package, porting a shell or script pipeline to a workflow engine, or accelerating it on GPU or in parallel - by freezing a baseline with seeds, versions and checksums, map

  • bio-analysis-script-pitfalls

    Write or review a differential-expression script, a GTF or GFF annotation parser or a publication figure script so that input contracts, annotation traps (1-based inclusive coordinates, gene id version suffixes, several transcripts per gene, quoted attributes), filter counts and a hand-checkable fix

  • fastq-mate-singleton-conservation-check

    Compare ordered FASTQ mate identities and eligible read conservation against source name/category inventories and explicit singleton and catch-all policies. Use when paired exports have equal counts but wrong pairing, orphan reads disappear or BAM-to-FASTQ recovery is questioned. Not for alignment,

  • vcf-reference-allele-normalization-check

    Compare exact reference spans and represented alternate sequences while tracing VCF allele indices, genotypes and annotations through normalization. Use when normalized variants cannot merge, REF repair is proposed or splitting changes allele-indexed fields. Not for clinical interpretation, variant

View source on GitHub

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