pathology-skills

Plugin pathology-skills from marketplace pathology-skills-collection in patolojiAI/pathology-skills-collection. Commands read from the repo's manifest — 21 days ago.

Skills (15)

• breast-pathology-specialist

  Comprehensive breast cancer pathology workflow combining CAP/ICCR compliance validation, synoptic template generation, TNM staging (AJCC 8th edition), biomarker reporting (ER/PR/HER2/Ki-67) per ASCO/CAP guidelines, tumor board summaries, and SNOMED coding for invasive breast carcinoma. Use when the

• colorectal-pathology-specialist

  Comprehensive colorectal cancer pathology workflow combining CAP/ICCR compliance validation, synoptic template generation, TNM staging (AJCC 8th edition), MSI/MMR testing interpretation, mesorectal excision quality (MERCURY) grading, tumor board summaries, and SNOMED coding. Use when the user upload

• gastric-pathology-specialist

  Comprehensive gastric cancer pathology workflow combining CAP/ICCR compliance validation, synoptic template generation, TNM staging (AJCC 8th edition), Lauren classification (intestinal/diffuse/mixed), WHO histologic typing, HER2 testing interpretation per ASCO/CAP, MSI/MMR status, tumor board summa

• pancreas-pathology-specialist

  Comprehensive pancreatic cancer pathology workflow combining CAP/ICCR compliance validation, synoptic template generation, TNM staging (AJCC 8th edition for exocrine pancreas), Whipple/distal-pancreatectomy specimen dissection guidance, axial slicing and margin assessment (SMA, SMV, posterior, anter

• pathology-coder

  Suggests SNOMED CT and ICD-O-3 morphology/topography codes for pathology diagnoses, procedures, and biomarkers, with hierarchical parent/child relationships and synonyms. Use when the user asks "SNOMED code for [diagnosis]", "ICD-O-3 code for [tumor type]", "what's the code for invasive ductal carci

• pathology-compliance-checker

  Validates surgical pathology cancer reports against CAP (College of American Pathologists) and ICCR (International Collaboration on Cancer Reporting) guidelines with severity-based compliance scoring (0-100) and automatic pT/pN/margin cross-validation. Use whenever the user pastes or uploads a patho

• pathology-report-checker

  Analyzes surgical pathology cancer reports for compliance with CAP (College of American Pathologists) and ICCR (International Collaboration on Cancer Reporting) guidelines. Validates pTNM staging (AJCC 8th edition), checks required element completeness with severity-based scoring, generates blank or

• pathology-template-generator

  Generates blank or pre-filled CAP-compliant synoptic pathology report templates with every required data element listed. Use when the user asks to "generate a synoptic template", "create a CAP report skeleton", "give me a blank breast lumpectomy template", "Whipple specimen template", "pre-fill temp

• pathology-tumor-board-summary

  Generates concise 3-5 line tumor board summaries from full pathology reports, extracting the diagnosis, TNM stage, margins, lymph node status, key biomarkers, and risk factors that drive MDT decisions. Use when the user pastes or uploads a pathology report (.pdf, .docx, .txt) and asks to "create a t

• qupath-guide

  Guides QuPath users in digital pathology with troubleshooting, interface navigation, image analysis workflows, and Groovy scripting. Use when the user mentions QuPath, or uses QuPath-specific signals such as .qpproj/.qpdata files, "Run for Project", "stain vectors", "TMA dearrayer", "detection objec

• reference-verifier

  Comprehensive academic reference auditor that performs four levels of verification on citations in uploaded manuscripts (.pdf, .docx). Level 1 checks if references actually exist. Level 2 verifies metadata accuracy (authors, year, journal, volume, pages). Level 3 checks whether the cited paper actua

• report-converter

  Converts free-text narrative pathology reports into structured CAP synoptic format and generates amendments/addenda/corrections for previously-issued reports. Use when the user uploads or pastes a narrative pathology report (.pdf, .docx, .txt) and asks to "convert to synoptic", "convert to CAP forma

• scientific-similarity-checker

  Analyze a scientific article (.pdf, .docx, image, or text) to find similar work across PubMed, OpenAlex, Semantic Scholar, IEEE, arXiv, Crossref, and the web. Detects similarity by abstract content, topic, authors, and journal. Issues tiered warnings (red/amber/green) when similarity levels suggest

• statistical-methods-reviewer

  Critically review the statistical methods used in a research article (.pdf, .docx, .pptx, .html, .txt). Extract every test and model the authors used, judge whether each is appropriate for the study design and data, and evaluate assumption checks, multiplicity control, sample-size justification, eff

• tnm-stage-calculator

  Fast TNM stage group calculation from pT, pN, pM categories using AJCC 8th edition criteria, with automatic consistency validation. Use when the user asks "what stage is pT2 N1 M0", "calculate TNM stage", "stage group for pT3 N1b breast", "is pT2 N0 M0 stage I or II", "stage this pancreatic cancer",

Similar plugins