claude

rulake-rvdna

rvDNA — genomic substrate for ruLake. Adds the rvdna-mcp wire (5 tools: find, call_variants, translate, score, lineage) plus 5 slash commands. v0.0.1 ships witnessed stubs; the RaBitQ inner loop, variant index, and codon table land in v0.1.

16 on GitHubby rUvv0.0.3MIT OR Apache-2.0updated yesterdaydata
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Plugin rulake-rvdna from marketplace rulake-marketplace in ruvnet/RuLake. Commands read from the repo's manifest — yesterday.

This plugin runs code on your machine — it starts local MCP servers. The exact commands are listed below; read them before installing.

What it installs

Slash commands (5)

  • /rulake-rvdna:rvdna-call-variants

    rvDNA T0 — variant calls for a region in a pinned collection. Returns whatever variants the registered RVDNA file's VariantTensor section holds for the region. Empty array if no variant data registered (genuine answer, not a stub). Witness-anchored.

  • /rulake-rvdna:rvdna-find

    rvDNA T0 — real brute-force L2 kNN over a pinned genomic collection. Returns a witnessed bundle pointer plus the matching segments. Deterministic; ties broken by lower id (matches the ADR-157 kernel-conformance contract).

  • /rulake-rvdna:rvdna-lineage

    rvDNA — internal capability tier. Reveals lineage / provenance metadata for a registered rvDNA collection (e.g. assembly version, source URI, build epoch). Gated by --capabilities internal.

  • /rulake-rvdna:rvdna-score

    rvDNA T0 — deterministic FNV-1a score in [0.0, 1.0] over (witness, region). Region-sensitive, witness-sensitive, reproducible across operators. Production scorer model wires here in v0.2.

  • /rulake-rvdna:rvdna-translate

    rvDNA T0 — real codon-table DNA → protein translation. Standard genetic code (64 codons → 20 amino acids + 3 stop codons). Case-insensitive, skips Ns + whitespace, stops at first stop codon. Witness-anchored.

MCP servers (1)

  • rvdna-mcp

    runs: rvdna-mcp stdio --demo-collection --capabilities read,internal

View source on GitHub ruvnet.github.io

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