oss

Plugin oss from marketplace open-science-skills in scdenney/open-science-skills. Commands read from the repo's manifest — 6 days ago.

Skills (43)

• advisor

  Consults Fable as an independent, read-only reviewer at an effort the caller matches to the question. The calling session (usually Opus, or Haiku) holds the task and escalates one decision point. Use before committing to an interpretation or a substantial piece of writing or analysis, when stuck or

• beamer

  House rules and craft for LaTeX Beamer slide decks (lectures, seminars, talks), drawn from the author's own Overleaf edits and published slide-design guidance. Covers storyboarding, frame titles, slide prose, word and frame budgets, layout without overfull boxes, XeLaTeX fonts and Korean (xeCJK), co

• citation-check

  Audits a manuscript's citations for fabricated or nonexistent sources, DOIs that resolve to a different work, mismatches between in-text citations and the reference list, APA 7 or journal style, and whether each source supports the claim it is attached to. Checks entries against Crossref, OpenAlex,

• conjoint-cleaning

  Turns a raw Qualtrics conjoint export into an analysis-ready long-format dataset, covering export settings, identifying the implementation, package or manual wide-to-long reshaping, choice-profile alignment, ratings, reference categories, pilot exclusion, and subgroup merges. Use when the user has a

• conjoint-design

  Designs conjoint and factorial-vignette experiments, covering attribute architecture and randomization restrictions, effective-N power, treatment realism, the choice among AMCE, marginal-mean, and AMIE estimands, forced-choice versus rating designs, and PAP tiers. Use when the user is planning a con

• conjoint-diagnostics

  Reviews an existing conjoint study for threats to inference and returns severity-ranked findings on design integrity, estimation, measurement error, external validity, and interpretation, including the guardrail against reading an AMCE as majority preference. Use when the user asks whether a conjoin

• cross-national-design

  Designs multi-country survey experiments, covering case selection with a stated comparative logic, instrument localization and TRAPD translation, stimulus calibration, per-country power, and pooled versus per-country analysis with measurement-equivalence checks. Use when the user fields the same exp

• deliverable-intake

  Turns raw captures (dictated braindumps in a deliverable's inbox/, or recent macwhspr dictation-log entries) into proposed planning-wiki changes, shown as one unified diff. Classifies each statement as a decision, evidence claim, question, task, or dropped item, traces it to its capture paragraph, t

• deliverable-lint

  Reviews a whole deliverable (talk, course module, paper, chapter, or referee report) against its manifest without rewriting it. Runs a deterministic gate for build, citations, numbers, facts, and leaks and stops on failure, then runs a finder over each section and a strong-model pass over the whole

• deliverable-open

  Opens a deliverable (talk, course module, paper, book chapter, or referee report) for AI-assisted work across sessions. Interviews the author for the manifest, then scaffolds deliverable.yml, an append-only HANDOFF.md, a numbered planning/ wiki with open questions, an inbox/ for dictated braindumps,

• diverge

  Generates 3-5 conceptually distinct approaches labeled Novel, Surprising, Diverse, or Conventional, and holds for the user's selection before implementing. The --codex mode runs the brainstorm on GPT-6 Astra via codex exec, then has Codex implement the selected approach. Use before committing to an

• doc-to-markdown

  Reads or converts documents in a research workflow, including PDF, Word, PowerPoint, Excel, OpenDocument, RTF, EPUB, and CSV. Chooses direct reading or conversion, selects a converter from document structure, and decides whether the Markdown is tracked or temporary. Use when a document must be read,

• fact-check

  Checks whether each claim in a manuscript is supported by the source it cites, reading the project's per-source Markdown knowledge base. Flags contradicted, unsupported, overclaimed, out-of-scope, and misattributed claims with verbatim source quotes. Runs citation-check first, and stops at a pre-fli

• figure-table-audit

  Runs end-stage QA on a finished figure and table set. Checks callouts, numbering, and cross-references, whether numbers in the text match the exhibits, self-contained captions and statistical notes, accessibility and production quality, and links to the SI and replication package. Values that could

• figures

  Designs publication figures for social-science manuscripts. Covers chart choice, axes and scales, color and accessibility, legend order, captions that carry the title, and script-based reproducibility. Use when making, revising, or critiquing a figure for a paper, such as a coefficient plot, small m

• finished

  End-of-session closure for a research or code repository. Records what changed into the project's own handoff and log files, separating verified work from work merely attempted, and reports what is left uncommitted. Use when wrapping up a session so the next one can resume without re-deriving state.

• hypothesis-building

  Turns a theory into falsifiable, pre-registerable hypotheses, covering the DGP and DAG, identification, SATE versus PATE, counterfactual and directional framing, named estimands, justified SESOIs, the choice among NHST, equivalence, interval, and minimum-effect tests, scope conditions, and primary,

• journal-review

  Drafts a referee report for a journal editor. Builds a ledger of the manuscript's load-bearing claims, runs five parallel adversarial finders against it (Breaker, Butcher, Shredder, Void, Situator), has a Blue Team test their evidence in both directions and rule on each claim, then writes a recommen

• list-experiment

  Designs and diagnoses list experiments (the item count technique), covering whether indirect measurement is warranted, control-list construction against floor and ceiling effects, design variants, estimators and assumption tests in the list package, and power planning for the precision penalty. Use

• literature-review

  Builds or audits a literature review, producing an evidence map, the closest prior work, source clusters, a gap verdict, and a synthesis plan for the introduction. Use when the user asks whether a contribution is novel, who has studied a question, what the literature establishes, or how to organize

• llm-calibration-logprobs

  Reads model uncertainty from token log-probabilities. Covers collecting logprobs and aggregating multi-token labels, confidence tiers and margins for triage, calibration assessment with ECE, Brier scores, and reliability diagrams against human labels, responsible downstream use of confidence, and re

• methods-reporting

  Audits a methods section against a 45-item reporting checklist synthesized from the APSA Experimental Section rubric, JARS-Quant, CONSORT, and DA-RT, covering pre-registration, recruitment, randomization and treatments, sample flow and attrition, sample-size justification, three-tier results labelin

• model-committee

  Runs a deliberative two-model committee of GPT-6 Astra and Claude Opus under a selectable chair, Fable by default, with `/model-committee-astra`, `/model-committee-opus`, and `/model-committee-sol` selecting the others. Use when a consequential decision has several defensible options and two model f

• narrative-building

  Drafts or audits a scientific paper’s introduction and framing — the real-world "why", an evidence audit, the funnel from theory to a falsifiable if-then with a named estimand, bridges across experiments, and a contribution list matched to the design. Use when the user asks to write, restructure, or

• orchestrate

  Runs a multi-model orchestration workflow led by the session's Fable or Claude Opus model. Sends menial tool-calling work to Haiku subagents, judgment work to Opus subagents at an effort matched to each task, and high-stakes or fresh-perspective questions to a GPT-6 Astra Codex peer. Detects the lea

• paper-review-lite

  Provides a pre-submission manuscript audit covering argument, numerical consistency, references and DOIs, writing, figures, CONSORT flow, pre-registration, and the replication archive. Use before paper submission or when a draft needs an adversarial, quote-grounded review with a journal-readiness ch

• paper-tex

  Typesets a working paper or journal submission in house-style LaTeX from Markdown, Word (.docx), TeX, ODT, RTF, or HTML. Converts with pandoc, wraps the body in an EB Garamond template, builds the PDF with latexmk, and sets journal-specific spacing, page limits, anonymization, disclosures, and citat

• pre-registration-writing

  Writes or reviews a pre-analysis plan before data collection — registry choice (OSF, AEA RCT Registry, AsPredicted, registered reports), PAP structure, models and decision rules locked in advance, analysis code run on simulated data, contingencies for attrition, failed manipulations, and exclusions,

• presubmit

  Launches and configures the standalone presubmit CLI, an API-driven adversarial peer-review pipeline with 40-plus stages, including Red Team finders, Blue Team defence, proportionality, verification cascade, reference check, legal pass, and copyedit, producing one consolidated report on disk. Verifi

• qualtrics-ops

  Operates or audits a live Qualtrics survey through the v3 APIs without disrupting fielding. Covers publish gating, quotas, flow routing, embedded data, panel-vendor redirects, read-back verification, and a read-only pre-fielding audit. Use when publishing or patching a fielding instrument, when a qu

• referee-response

  Organizes an author’s response to peer review. Extracts every referee and editor point, tags severity and type, orders the revision by dependency, flags defensible pushbacks as questions, and builds a numbered comment → response → location letter whose substantive answers the author writes. Use when

• replication-package

  Scaffolds or audits a social-science replication package and evaluates the manuscript and archived research objects against FAIR principles. Scaffold mode writes the folder structure, README, master.R, figure-table crosswalk, codebook, LICENSE placeholder, and .gitignore; audit mode grades the packa

• research-grill

  Interviews a researcher in rounds until an idea, design, or draft has no unexamined decision — numbered questions, each with why it matters and a recommended answer, facts looked up rather than asked, and settled decisions written to a file. Stages are idea (topic or hunch to a falsifiable question

• research-repo

  Scaffolds or audits a research-project repository organized around its source library (original PDFs, tracked Markdown conversions, drop zone, bibliography, intake pipeline) plus the analysis, manuscript, and review folders the project type needs. Use when starting, structuring, or auditing a resear

• research-wayfinder

  Plans a research project as a decision map that persists across sessions, resolving one ticket per session until the design is defensible and pre-registerable. The map lives as Markdown in the repository, literature sweeps run as parallel research tickets, and the resolved map compiles into a pre-an

• sitrep

  Start-of-session situational report for a research or code repository. Reads the handoff, log, or status files the project actually keeps, checks live git state, and reports the objective, verified baseline, open tasks, blockers, and next actions, flagging where the documents and the repository disa

• survey-data-audit

  Audits fielded survey-response data for registered elements, data quality, bot and AI-automation screening, and sample integrity, and produces an appendix-ready quality report. Use at soft launch before full field, after fielding before outcomes are analyzed, or when asked what a study did about bot

• survey-design

  Designs survey instruments, covering question wording, scale construction and index reliability, flow and treatment placement, pretesting and soft launches, respondent burden with attention and speeding rules, sensitive questions and social-desirability bias, and treatment delivery. Use when the use

• tables

  Designs publication tables for social-science manuscripts. Covers whether a result belongs in a table at all, column order, row grouping and panels, decimal precision, standard-error and confidence-interval conventions, self-contained titles and notes, and code-generated output. Use when building or

• text-classification

  Advises on setting up LLM-based text classification as a validated measurement design. Covers codebook construction, learning-regime and model choice, prompt construction, validation against human coding with kappa and F1, hybrid human-LLM review, downstream measurement error, and reporting, plus a

• topic-modeling

  Advises on setting up and validating topic models for survey and experimental text. Covers the discovery-versus-measurement question, choosing STM, LDA, or BERTopic, preprocessing consequences, prevalence and content formulas, topic-count selection across coherence, exclusivity and FREX, held-out li

• vlm-ocr-alice

  Runs the GPU part of a vlm-ocr pipeline on Leiden University's ALICE cluster. Decides whether a corpus needs ALICE, picks a GPU partition for the model, sets up storage, a pinned vLLM environment and offline weights, ships code and scans, runs a gate job and chained bulk jobs with the bundled SLURM

• vlm-ocr

  OCRs scanned or image-only corpora with vision-language models in four phases. Triage inventories the scans, identifies script and language, and shortlists models by script, hardware, and data constraints. Evaluate selects a system by measured CER or WER against ground truth, using born-digital twin

Slash commands (11)

• /oss:diverge-codex
• /oss:fair-check
• /oss:model-committee-astra
• /oss:model-committee-opus
• /oss:model-committee-sol
• /oss:paper-review-lite-codex
• /oss:post-ocr-cleanup
• /oss:survey-flow-audit
• /oss:verify
• /oss:vlm-ocr-evaluation
• /oss:vlm-ocr-pipeline

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