alterlab-databases
claudeConnectors to scientific databases (PubMed, ChEMBL, UniProt, GEO, and more) (38 skills)
38 skills · 1 MCP server
Core research-to-publication pipeline plus teaching and thesis tools (10 skills)
Plugin alterlab-core from marketplace alterlab-academic-skills in AlterLab-IEU/AlterLab-Academic-Skills. Commands read from the repo's manifest — 6 days ago.
This plugin runs code on your machine — its hooks fire automatically on events like tool use and it starts local MCP servers. The exact commands are listed below; read them before installing.
alterlab-citation-verifierVerifies every bibliography entry actually exists by checking Crossref, Semantic Scholar, Europe PMC, and arXiv, with Open Library for books (no API key required), plus doi.org DOI registration, fuzzy-matching title and authors, flagging retractions recorded by Crossref (incl. Retraction Watch), and
alterlab-deep-researchRuns a 13-agent deep research pipeline for rigorous academic work on any topic across 7 modes (full research, quick brief, paper review, lit-review, fact-check, Socratic guided research dialogue, and systematic review with optional meta-analysis), covering research-question formulation, Socratic men
alterlab-link-healthAudits and repairs Markdown link health across a skills repo via a four-tier pipeline (config hardening, intra-repo file-ref fixes, external URL substitutions, residual exclusions) and enforces a Tier 3 substitution guardrail that prevents regressions of previously-passing links; designed for lychee
alterlab-paper-reviewerSimulates a full multi-reviewer journal review PANEL — 5 personas (Editor-in-Chief + 3 peer reviewers + a Devil's Advocate) debate a manuscript and produce a consensus Editorial Decision (accept/minor/major/reject) plus a prioritized Revision Roadmap. Modes: full, re-review (verify revisions address
alterlab-paper-writerDrafts and revises academic papers through a 12-agent pipeline with hardened LaTeX output (apa7 class, PDF compiled from LaTeX), supporting IMRaD, literature review, theoretical, case study, policy brief, and conference paper structures, APA 7.0 (default), Chicago, MLA, IEEE, and Vancouver citation
alterlab-research-pipelineOrchestrates the full academic research pipeline (research, write, integrity check, review, revise, re-review, re-revise, final integrity check, finalize), coordinating alterlab-deep-research, alterlab-paper-writer, and alterlab-paper-reviewer into a seamless 10-stage workflow with mandatory integri
alterlab-skill-finderThe AlterLab front door and multi-agent launcher — routes a task to the right AlterLab skill(s) when the user invokes the suite without naming one, and for a multi-stage goal (or on the keyword 'alterflow', aliases 'alterresearch' / 'ultralab') it clarifies the goal with a few questions before anyth
alterlab-teaching-designDesigns courses and teaching materials using backward design (Wiggins & McTighe), constructive alignment (Biggs), and Bloom's taxonomy alignment, generating rubrics, formative and summative assessments, syllabi, lesson plans, inclusive-pedagogy guidance, and online/hybrid course architecture. Use wh
alterlab-thesis-supervisorSupervises theses and dissertations end to end — structure guidance from proposal through defense, chapter-by-chapter writing support (introduction, literature review, methodology, results, discussion), supervision strategies, committee management, defense and viva voce preparation, timeline plannin
alterlab-workflow-orchestrationComposes existing AlterLab skills into multi-agent agentic workflows using current Claude Code orchestration primitives — subagents (including nested subagents), dynamic workflow scripts, agent teams, forks, and the Claude Agent SDK: parallel fan-out, sequential pipelines, judge panels, adversarial
crossrefruns: npx -y @botanicastudios/[email protected]
uv run --no-project python "${CLAUDE_PLUGIN_ROOT}/scripts/stamp_figure.py"
Connectors to scientific databases (PubMed, ChEMBL, UniProt, GEO, and more) (38 skills)
38 skills · 1 MCP server
Genomics, proteomics, and single-cell analysis (Scanpy, BioPython, pysam, ESM) (38 skills)
38 skills
Machine learning and statistics (scikit-learn, PyTorch, transformers, SHAP) (22 skills)
22 skills
Quantum computing, geospatial, materials, astronomy, and digital humanities (18 skills)
18 skills
Stage-gated social-science methods spine — orchestrator + 5 validity gates (design/identifying-assumption, measurement, sampling/power, reflexivity, inference) and 11 analysis modules (causal inference, complex-survey analysis, SEM/psychometrics, multilevel models, QCA, SNA, ABM, text-as-data, qualitative analysis, meta-analysis, missing data) (17 skills)
17 skills
Search, discovery, Zotero, qualitative methods, ethics, and open science (14 skills)
14 skills
Rewrite AI-sounding text so it reads like the writer without changing what it says.
1 skill
5 skills + 35 modes + Material Passport pipeline. Includes v3.6.7 cross-model audit gate and v3.6.8 generator-evaluator contract.
5 skills · 16 commands · 4 agents · hooks
CI/CD pipeline configuration, GitHub Actions/GitLab CI workflow setup, and automated deployment pipeline orchestration
4 skills · 1 command · 5 agents
Without good data, your agent gives generic advice. Keyword research, competitor research, backlinks, and site audits. All for $10/month.
12 skills · 1 MCP server
Connect providers and targets, write eval suites, and set up or run red team scans with promptfoo
4 skills
Connect Claude to Prowler Cloud through the Prowler MCP server. Reads providers, scans, findings, compliance results and resources for AWS, Azure, GCP, Kubernetes, Microsoft 365, GitHub and the other providers listed at https://registry.prowler.com, and returns remediation guidance for failed checks. Writes are limited to Prowler Cloud itself: triggering scans, finding triage, mute rules and the mutelist, providers and integrations. Your cloud resources are not changed by the connector.
1 skill · 1 MCP server
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