alterlab-academic-skills

Connectors to scientific databases (PubMed, ChEMBL, UniProt, GEO, and more) (38 skills)

38 skills · 1 MCP server

Genomics, proteomics, and single-cell analysis (Scanpy, BioPython, pysam, ESM) (38 skills)

38 skills

Machine learning and statistics (scikit-learn, PyTorch, transformers, SHAP) (22 skills)

22 skills

Quantum computing, geospatial, materials, astronomy, and digital humanities (18 skills)

18 skills

Stage-gated social-science methods spine — orchestrator + 5 validity gates (design/identifying-assumption, measurement, sampling/power, reflexivity, inference) and 11 analysis modules (causal inference, complex-survey analysis, SEM/psychometrics, multilevel models, QCA, SNA, ABM, text-as-data, qualitative analysis, meta-analysis, missing data) (17 skills)

17 skills

Search, discovery, Zotero, qualitative methods, ethics, and open science (14 skills)

14 skills

Scientific writing, citations, grants, posters, and academic career (14 skills)

14 skills

Turkish academic system workflows (YÖK, ÜAK, DergiPark, YÖK-Tez, TÜBİTAK, doçentlik) (13 skills)

13 skills

Chemistry and drug discovery (RDKit, docking, ADMET, mass spec) (12 skills)

12 skills

Core research-to-publication pipeline plus teaching and thesis tools (10 skills)

10 skills · 1 MCP server · hooks

Laboratory platforms (Benchling, DNAnexus, Opentrons, Protocols.io) (9 skills)

9 skills

Publication-quality plotting and schematics (Matplotlib, Seaborn, Plotly) (9 skills)

9 skills

Clinical decision support, medical imaging, and regulatory workflows (7 skills)

7 skills

Economic and financial data (FRED, Alpha Vantage, SEC EDGAR, market research) (7 skills)

7 skills

Faculty research-lifecycle and academic administration (syllabus AI-policy, IRB/consent, post-award grant admin, recommendation letters, accreditation AoL) (6 skills)

6 skills

Document and Markdown conversion (MarkItDown, Open Notebook) (3 skills)

3 skills

Research methodology and rigor scaffolds (Iron Laws, rationalization tables, decision flowcharts, systematic-reasoning checklists) (3 skills)

3 skills

Runnable multi-agent research workflows for Claude Code (systematic-review screening, citation audit, review panel, claim stress-test, rebuttal, grant mock panel, literature map) plus the portable playbook skill (1 skill)

1 skill

The complete AlterLab Academic Skills suite — installs every domain plugin in one step

Faculty starter kit — installs the core research-to-publication pipeline, the multi-agent research workflows, research tools, writing tools, methodology gates, and scientific-database connectors in one step