alterlab-databases
claudeConnectors to scientific databases (PubMed, ChEMBL, UniProt, GEO, and more) (38 skills)
38 skills · 1 MCP server
Scientific writing, citations, grants, posters, and academic career (14 skills)
Plugin alterlab-writing-tools from marketplace alterlab-academic-skills in AlterLab-IEU/AlterLab-Academic-Skills. Commands read from the repo's manifest — 6 days ago.
alterlab-academic-careerPrepares academic career documents and professional-development materials for faculty and researchers. Use when drafting academic CVs, research statements, teaching philosophies, diversity statements, faculty-position cover letters, tenure dossiers, promotion narratives, academic portfolios, or ment
alterlab-ai-use-disclosureHelps faculty and researchers disclose generative-AI use and comply with the rules for manuscripts, grant proposals, peer review, theses and figures. Walks a venue → policy → placement decision tree over policies verified on 2026-09-23 (ICMJE, Springer Nature/Nature, Elsevier, Wiley, Taylor & Franci
alterlab-citation-mgmtManages citations for academic research — searches Google Scholar and PubMed for papers, extracts complete metadata from DOIs, PMIDs, and arXiv IDs (CrossRef, doi.org content negotiation, NCBI E-utilities, arXiv API), validates BibTeX entries for required fields, format, and duplicates, and generate
alterlab-hypothesis-genFormulates structured, testable hypotheses from experimental observations using a scientific-method framework — derives predictions, proposes mechanisms, and designs experiments to test them, then renders a LaTeX report. Use when turning observations or data into falsifiable, mechanistic hypotheses,
alterlab-latex-postersCreates professional research posters in LaTeX using beamerposter, tikzposter, or baposter — handles layout design, color schemes, multi-column formats, figure integration, and poster-specific visual-communication best practices. Use when building a conference or academic poster in LaTeX (the defaul
alterlab-literature-reviewConducts comprehensive, systematic literature reviews across multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar), with PRISMA 2020 flow tracking, study screening (title/abstract and full-text), evidence-table extraction, and risk-of-bias assessment (RoB 2, ROBINS-I, AMSTAR 2), pro
alterlab-paper-2-webConverts a finished academic paper (PDF or LaTeX source) into promotional and presentation formats with no API key — Claude reads the paper and builds an interactive project website (static HTML/CSS for GitHub Pages; Paper2Web), a print-ready conference poster (LaTeX with QR code; Paper2Poster), a n
alterlab-peer-reviewWrites structured, checklist-based single-reviewer reports for manuscripts and grant proposals — assesses methodology, statistical validity, reporting-standards compliance (CONSORT 2025, SPIRIT 2025, STROBE, PRISMA 2020, ARRIVE 2.0), reproducibility, and ethics, and gives constructive, prioritized f
alterlab-pptx-postersCreates research posters in HTML/CSS with responsive layouts and easy visual integration, exportable to PDF or PPTX. Use ONLY when the user explicitly requests a PowerPoint/PPTX/PPT poster, an HTML/web-based poster, or a poster they will edit in PowerPoint, or when LaTeX is unavailable. For a standa
alterlab-research-grantsWrites competitive research grant proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC — applies agency-specific formatting and current review criteria (NIH Simplified Review Framework, NSF Intellectual Merit and Broader Impacts under PAPPG 24-1), prepares budgets and justifications, drafts Specific
alterlab-scholar-evalEvaluates scholarly work with a ScholarEval-inspired eight-dimension rubric, producing structured assessment across research-quality dimensions (problem formulation, literature, methodology, data, analysis, results, writing, and citations) with quantitative 1-5 rubric scores, weighted aggregates, an
alterlab-scientific-slidesBuilds slide decks for research talks with no API key — editable PowerPoint generated from a deck plan (python-pptx) or LaTeX Beamer, slide visuals drawn as code and rendered locally, plus slide structure, design templates, timing guidance, and visual validation of every page. Optional AI-generated
alterlab-scientific-writingWrites scientific manuscripts in full flowing paragraphs (never bullet points) via a two-stage process — section outlines with key points using alterlab-research-lookup, then conversion to prose — applying IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, and current reporting guidelin
alterlab-venue-templatesProvides LaTeX templates, formatting requirements, and submission guidelines for major scientific venues (Nature, Science, PLOS, IEEE, ACM, Cell Press), conferences (NeurIPS, ICML, ICLR, CVPR, CHI), research posters, and grant proposals (NSF, NIH, DOE, DARPA). Also covers venue-specific writing styl
Connectors to scientific databases (PubMed, ChEMBL, UniProt, GEO, and more) (38 skills)
38 skills · 1 MCP server
Genomics, proteomics, and single-cell analysis (Scanpy, BioPython, pysam, ESM) (38 skills)
38 skills
Machine learning and statistics (scikit-learn, PyTorch, transformers, SHAP) (22 skills)
22 skills
Quantum computing, geospatial, materials, astronomy, and digital humanities (18 skills)
18 skills
Stage-gated social-science methods spine — orchestrator + 5 validity gates (design/identifying-assumption, measurement, sampling/power, reflexivity, inference) and 11 analysis modules (causal inference, complex-survey analysis, SEM/psychometrics, multilevel models, QCA, SNA, ABM, text-as-data, qualitative analysis, meta-analysis, missing data) (17 skills)
17 skills
Search, discovery, Zotero, qualitative methods, ethics, and open science (14 skills)
14 skills
AgentDB (external: maintained in ruvnet/agentdb, pinned to commit 27678c3, plugin 3.6.0): agentdb's own standalone MCP server pinned to [email protected] (vector memory with get/list/update/delete for records, patterns and skills, hybrid keyword + vector episode search and an opt-in local cross-encoder, an opt-in aidefence injection guard on memory writes, reflexion, skills, outcome feedback, capabilities report), a memory-specialist agent, 3 skills, /agentdb-status, and the agentdb mod guard that keeps secrets out of memory and refuses delete/reset unless allowed. Complements ruflo-agentdb, which reaches AgentDB through ruflo's server
3 skills · 1 command · 1 agent · 1 MCP server
Rewrite AI-sounding text so it reads like the writer without changing what it says.
1 skill
5 skills + 35 modes + Material Passport pipeline. Includes v3.6.7 cross-model audit gate and v3.6.8 generator-evaluator contract.
5 skills · 16 commands · 4 agents · hooks
OpenAPI specification generation, Mermaid diagram creation, tutorial writing, API reference documentation
3 skills · 1 command · 5 agents
Provision direct cloud access (Vertex AI, Bedrock, or LLM gateway) for the Claude Microsoft 365 add-in. Generates the customized manifest, walks through Azure admin consent, and writes per-user config via Graph extension attributes.
1 skill · 9 commands
Prep calls, summarize and follow up, research accounts, review deals and pipeline, and write the forecast, using the CRM, email, calendar and chat tools your team already uses, or uploaded files. Updates records, drafts or sends email, posts to chat and books meetings when you ask.
36 skills · 23 MCP servers
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