Paperclip2BioOKF

Plugin paperclip2biookf in Broccolito/BioOKF. Commands read from the repo's manifest — 12 days ago.

Skills (6)

• analyze-biookf-network

  Calculate and interpret topology metrics, node centralities, Leiden communities, and source-year evidence growth for a local BioOKF knowledge base. Use when asked to characterize network structure, find hubs or bridges, inspect fragmentation or modularity, compare KBs, export metric JSON, or analyze

• chat-with-biookf

  Answer questions from a selected local BioOKF knowledge base using grounded node-and-edge retrieval and the user's local Codex or Claude subscription. Use when asked to chat with, interrogate, summarize, compare, or trace provenance inside a BioOKF KB.

• create-local-biookf

  Create and register a verified BioOKF knowledge base from a local folder of PDF, DOCX, Markdown, or text papers using the user's local Codex or Claude subscription. Use for private paper collections and offline folder-to-KB ingestion.

• doctor-biookf

  Inspect and transactionally revise a local BioOKF knowledge base against its cited raw evidence using the user's Codex or Claude subscription. Use when asked to recheck a specific edge against papers, repair provenance, correct a claim, split a conflated concept, merge duplicate nodes, resolve ident

• generate-paperclip-kb

  Discover biomedical papers, trials, or regulatory evidence with the machine-local Paperclip CLI and generate a verified BioOKF knowledge base using the user's local Codex or Claude subscription. Use for Paperclip searches, evidence-to-graph generation, date-scoped KB creation, and Paperclip2BioOKF r

• merge-biookf-bases

  Semantically merge two or more local BioOKF knowledge bases with provenance preservation, canonical identifier reconciliation, deterministic verification, and the user's local Codex or Claude subscription. Use for KB consolidation, refresh integration, deduplication, and longitudinal evidence growth

MCP servers (1)

• biookf

  runs: bokf-mcp