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biotope

Croissant→BioCypher knowledge-graph construction

9 on GitHubby BioCypher Teamv0.8.0Apache-2.0updated 19 days ago
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Plugin biotope from marketplace helmholtz-agent-skills in HelmholtzAI-Consultants-Munich/helmholtz-agent-skills. Commands read from the repo's manifest — 18 days ago.

What it installs

Skills (2)

  • biocypher

    Standalone BioCypher knowledge-graph ETL — adapters, schema_config.yaml, biocypher_config.yaml, Neo4j/CSV/PostgreSQL/RDF export, write_schema_info. Not for typed Biotope projects, which own their schema in Python.

  • biotope-croissant

    Builds typed knowledge-graph projects with Biotope from local data described in Croissant. Covers registering and curating manifests for tables and documents, extracting records from papers, web pages and other documents under a reviewed extraction schema, generating the complete source inventory, a

View source on GitHub

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