nextflow
claudeScalable bioinformatics workflows with Nextflow and nf-core
30 skills
Method skills that belong to no single tool
Plugin method-skills from marketplace helmholtz-agent-skills in HelmholtzAI-Consultants-Munich/helmholtz-agent-skills. Commands read from the repo's manifest — 18 days ago.
dataset-scoutinguse this whenever the user is examining public data, asking whether a study's metadata or raw data is actually usable, looking for exact raw-data download links, extracting the preprocessing or technical details a paper reports, building or updating a candidate list / shortlist / inclusion table, de
grillingStress-tests plans, decisions, and ideas through probing questions and co-creation. Use when the user asks to be grilled or wants to develop and challenge their thinking through an interview.
pureclip-optimizationTune PureCLIP parameters for protein-RNA crosslink site calling on eCLIP, iCLIP or PAR-CLIP data
Scalable bioinformatics workflows with Nextflow and nf-core
30 skills
Single-cell RNA-seq analysis with Scanpy
8 skills
Reproducibility checks for research code and papers via RepoReady MCP, with cited issues to fix
1 skill · 2 commands · 1 MCP server
Croissant→BioCypher knowledge-graph construction
2 skills
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