materio
claudeMaterio: materials research interviews, supplied-corpus synthesis, lab feasibility, task execution and verified paper handoff.
6 skills
Life-science pack: skills that query the RCSB Protein Data Bank, UniProtKB and PubChem over their public, key-free REST APIs with web_fetch, and stamp each answer with the source's entry revision or release. Every lookup needs network; offline the skills say the source is unreachable.
Plugin life-science from marketplace clio-coder in iowarp/clio-coder. Commands read from the repo's manifest — today.
pdb-structuresLooks up macromolecular structures in the RCSB Protein Data Bank over its public REST APIs with web_fetch: entry metadata, method and resolution, entities and their UniProt mapping, ligands, full-text search, and coordinate file URLs, each answer stamped with the entry's revision. Not for modeling o
pubchem-compoundsLooks up small molecules in PubChem over PUG REST with web_fetch: name or SMILES to CID, computed properties (formula, weight, SMILES, InChIKey, IUPAC name), synonyms, with request pacing inside PubChem's usage limits. Not for property prediction or synthesis planning.
uniprot-proteinsLooks up proteins in UniProtKB over the UniProt REST API with web_fetch: entries by accession, field-selected search, FASTA sequences, and cross-references such as PDB IDs, each answer stamped with the UniProt release and entry version. Not for sequence alignment or structure prediction.
Materio: materials research interviews, supplied-corpus synthesis, lab feasibility, task execution and verified paper handoff.
6 skills
HPC pack: Slurm job arrays and sweeps through the clio-kit Slurm server, Lmod and Spack software environments, parallel HDF5 and MPI-IO, Darshan I/O analysis, and ChronoLog run records. The skills drive the cluster's own command-line tools; the clio-kit Slurm server needs one online launch to build its environment before it runs offline.
5 skills
Literature pack: verifies citations and resolves DOIs and arXiv IDs through the CiteNexus MCP server (cite-nexus-mcp 0.2.2, key-free Crossref, DataCite, Europe PMC and arXiv), with an offline extractor for BibTeX and Markdown and a web_fetch fallback. Adds a hypothesis workflow: cited grounding, independent council proposals, a testability ranking and the smallest experiment per hypothesis, ending at the operator's own choice. Extends arxiv-literature. Needs network for every lookup; the server needs one online launch to install.
2 skills
Decides the engineering approach for an intent in an interactive session: investigates, proposes two or three genuinely different approaches with trade-offs, recommends, lets the user decide, and writes the decision doc. Not a task-by-task plan; use sprint-plan. Not a multi-perspective debate; use design-council. Not product intent; use product-intent. Not a typed implementation handoff; use tech-spec.
1 skill
Searches arXiv, summarizes or compares papers, and builds a compact literature survey as citation-ready, source-linked paper cards, with BibTeX export and ID verification through the CiteNexus server when the literature pack is installed. Prefer the Researcher shadow agent for noisy multi-paper retrieval.
1 skill
Structural code search with ast-grep rules: finds code by shape when grep on text is too noisy, and never rewrites it. Not for plain string or filename lookups; use grep or find.
1 skill
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