Materio: materials research interviews, supplied-corpus synthesis, lab feasibility, task execution and verified paper handoff.
Plugin materio from marketplace clio-coder in iowarp/clio-coder. Commands read from the repo's manifest — today.
materio-lab-definerInterviews the researcher about equipment, compute, licenses, people and access constraints, and writes .research/VIRTUAL-LAB.md with a resource-to-task feasibility map, gaps and alternatives. Use when running define-virtual-lab.
materio-literature-reviewerReviews the supplied corpus and provided URLs for a confirmed materials research question and writes .research/LITERATURE.md with citation provenance, inspection depth and explicit gaps. Use when running literature-review.
materio-research-explorerInterviews the researcher about a new materials research direction, offers three calibrated candidate questions, and writes the confirmed research identity under .research/. Use when starting a Materio project or running identify-research.
materio-task-executorProduces the type-specific artifacts and summary for one approved Materio task under its .research/tasks/ directory, keeping prepared work distinct from measured or computed results. Use when running execute-task.
materio-task-verifierIndependently inspects one executed Materio task's outputs against its approved specification, assumptions and evidence, without changing files, and reports findings with a complete, blocked or needs_input verdict. Use after execute-task produces artifacts.
materio-workflow-plannerCustomizes a research workflow with the researcher and writes .research/WORKFLOW.md: stable task IDs, dependency order, researcher assumptions and tagged defaults, checked against the virtual lab. Use when running define-research-tasks.
HPC pack: Slurm job arrays and sweeps through the clio-kit Slurm server, Lmod and Spack software environments, parallel HDF5 and MPI-IO, Darshan I/O analysis, and ChronoLog run records. The skills drive the cluster's own command-line tools; the clio-kit Slurm server needs one online launch to build its environment before it runs offline.
5 skills
Life-science pack: skills that query the RCSB Protein Data Bank, UniProtKB and PubChem over their public, key-free REST APIs with web_fetch, and stamp each answer with the source's entry revision or release. Every lookup needs network; offline the skills say the source is unreachable.
3 skills
Literature pack: verifies citations and resolves DOIs and arXiv IDs through the CiteNexus MCP server (cite-nexus-mcp 0.2.2, key-free Crossref, DataCite, Europe PMC and arXiv), with an offline extractor for BibTeX and Markdown and a web_fetch fallback. Adds a hypothesis workflow: cited grounding, independent council proposals, a testability ranking and the smallest experiment per hypothesis, ending at the operator's own choice. Extends arxiv-literature. Needs network for every lookup; the server needs one online launch to install.
2 skills
Decides the engineering approach for an intent in an interactive session: investigates, proposes two or three genuinely different approaches with trade-offs, recommends, lets the user decide, and writes the decision doc. Not a task-by-task plan; use sprint-plan. Not a multi-perspective debate; use design-council. Not product intent; use product-intent. Not a typed implementation handoff; use tech-spec.
1 skill
Searches arXiv, summarizes or compares papers, and builds a compact literature survey as citation-ready, source-linked paper cards, with BibTeX export and ID verification through the CiteNexus server when the literature pack is installed. Prefer the Researcher shadow agent for noisy multi-paper retrieval.
1 skill
Structural code search with ast-grep rules: finds code by shape when grep on text is too noisy, and never rewrites it. Not for plain string or filename lookups; use grep or find.
1 skill
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