Research Tools

Plugin research-tools in jialuohu/codex-toolbox. Commands read from the repo's manifest — 1 month ago.

Skills (10)

• defuddle

  Extract a standalone public article URL as clean Markdown. Excludes community threads, configured WeChat reading, and raw Markdown URLs.

• docmost-lab-wiki

  Use for the private Obsidian Lab Wiki mirror of Docmost: sync, query, synthesize, lint, or rebuild its local index. Never mutate Docmost.

• mineru-document-extraction

  Use MinerU for one complex, scanned, OCR-heavy, or layout-sensitive local document, including bounded pages and checksum-verified extraction artifacts.

• paper-library-intake

  Find or check one public academic paper in Zotero, classify it, or import it with an authorized verified PDF. Private assigned reviews use the paper-review workflows.

• paper-read-draft

  Use when a user asks to set up, create, prepare, or start a brief Obsidian PaperRead draft or paper-reading note.

• paper-read-review

  Use when a user asks to review, critique, fact-check, strengthen, or annotate an existing Obsidian PaperRead or paper-reading note by adding source-backed comments inside that note.

• paper-review-library-intake

  Import or repair one confidential Docmost review submission in Zotero Research/PaperReview. Excludes public paper discovery and ordinary library intake.

• paper-review-page

  Prepare or repair one confidential assigned-review page under the matching Docmost conference, using its exact Paper Number and a blank review form.

• paper-review-sync

  Check or reconcile confidential Docmost review assignments with Todoist, Zotero Research/PaperReview, and matching review-comment pages.

• zotero-todoist-reading-tasks

  Use when a user wants to create, schedule, reconcile, or repair Todoist reading tasks from saved Zotero items or collections, with default PaperRead note links.

MCP servers (2)

• paper_search_mcp

  runs: /bin/zsh -lc SECRETS_DIR="${CODEX_SECRETS_DIR:-${CODEX_HOME:-$HOME/.codex}/secrets}"; SECRET_FILE="$SECRETS_DIR/paper-search-mcp.env"; if [ ! -f "$SECRET_FILE" ]; then echo "Missing CODEX_SECRETS_DIR/

• zotero

  runs: /bin/zsh -lc SECRETS_DIR="${CODEX_SECRETS_DIR:-${CODEX_HOME:-$HOME/.codex}/secrets}"; SECRET_FILE="$SECRETS_DIR/zotero.env"; if [ ! -f "$SECRET_FILE" ]; then echo "Missing CODEX_SECRETS_DIR/zotero.env

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