Labcoat

Plugin labcoat in qchiujunhao/labcoat. Commands read from the repo's manifest — 1 month ago.

Skills (9)

• labcoat-biomedical-discipline

  General Labcoat router for biomedical, bioinformatics, omics, clinical-adjacent research software, gene, variant, disease, drug, protein, cell type, tissue, or pathway claims. Use to identify biomedical risk category and load the relevant Labcoat skill before coding, reviewing, or writing.

• labcoat-biomedical-ml-hygiene

  Biomedical ML hygiene for leakage, patient-level splits, subject/sample identifiers, site/batch leakage, label leakage, calibration, external validation, and preprocessing fit-before-split risks. Use when building or reviewing ML code for biomedical data.

• labcoat-biosecurity-boundary

  Biosecurity and wet-lab safety boundary for pathogen, toxin, synthesis, virulence, immune evasion, gain-of-function, culture, transformation efficiency, protocol, or wet-lab optimization requests. Use to keep assistance high-level, defensive, and non-operational.

• labcoat-clinical-boundary

  Clinical boundary for biomedical coding agents. Use for patient-specific symptoms, labs, diagnosis, triage, dosing, treatment, medication adjustment, clinical validity, or clinician-replacement language; allow research software and synthetic examples.

• labcoat-entity-discipline

  Gene, variant, disease, drug, protein, cell type, tissue, marker, ortholog, HGVS, rsID, transcript, species, and genome-build ambiguity discipline. Use when biomedical entity interpretation could change by organism, identifier system, reference, or provenance.

• labcoat-evidence-not-assertion

  Biomedical evidence and claim-strength discipline. Use for disease, gene, variant, drug, protein, pathway, clinical-validity, citation, PMID, DOI, association, causation, diagnosis, treatment, or literature-backed claims.

• labcoat-minimal-bio-code

  Ponytail-style coding discipline for biomedical and bioinformatics code. Use when adding or reviewing biomedical code, dependencies, parsers, scripts, pipelines, or tests where minimal safe implementation and biological assumptions matter.

• labcoat-omics-reproducibility

  Reproducibility discipline for RNA-seq, scRNA-seq, ATAC-seq, variant, proteomics, imaging, Scanpy, Seurat, clustering, and omics pipeline work. Use when inputs, references, seeds, QC thresholds, layers, versions, or outputs affect scientific correctness.

• labcoat-reviewer

  PR and diff review skill for biomedical coding-agent output. Use for reviewing generated patches, pull requests, diffs, or final changes involving biomedical software, safety boundaries, reproducibility, evidence claims, dependency bloat, or loop guardrail integrity.

Hooks (5)

• SessionStart

  sh ${PLUGIN_ROOT}/hooks/labcoat_hook.sh session-start

• UserPromptSubmit

  sh ${PLUGIN_ROOT}/hooks/labcoat_hook.sh user-prompt-submit

• PreToolUse

  sh ${PLUGIN_ROOT}/hooks/labcoat_hook.sh pre-tool-use

• PostToolUse

  sh ${PLUGIN_ROOT}/hooks/labcoat_hook.sh post-tool-use

• Stop

  sh ${PLUGIN_ROOT}/hooks/labcoat_hook.sh stop

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