casetrack
Manifest-centric case management for bioinformatics cohorts on HPC: tracks which analyses are done, which samples are usable, and the lineage of cohort / reference / derived artifacts (proposals 0009-0013).
Not in a marketplace yet, so it loads for one session with --plugin-dir.
Plugin casetrack in sahuno/casetrack. Commands read from the repo's manifest — 1 month ago.
This plugin runs code on your machine — its hooks fire automatically on events like tool use and it starts local MCP servers. The exact commands are listed below; read them before installing.
What it installs
Skills (1)
casetrackUse whenever the user works with **casetrack** — the manifest-centric bioinformatics case management CLI that tracks analyses across multi-patient, multi-specimen, multi-assay cohorts (cancer genomics, ONT/Illumina WGS, RNA-seq). Trigger on any casetrack command (`init`, `add-metadata`, `append`, `r
Slash commands (1)
/casetrack:casetrack-statusSummarize the casetrack project in the current directory — entity counts, censored samples, stale cohort artifacts, and the next obvious work.
MCP servers (1)
casetrackruns: casetrack-mcp
Hooks (1)
- SessionStart
"${CLAUDE_PLUGIN_ROOT}"/hooks/session-start.sh
Maintain casetrack?
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