Science plugins

2,700+ scientific tools (PubMed, UniProt, PubChem, TCGA, FAERS, ClinicalTrials.gov, etc.) + 160+ research skills + MCP server + research slash commands.

163 skills · 8 commands · 1 agent · 1 MCP server · hooks

NVIDIA BioNeMo agent skills for life sciences — protein folding, molecular docking, generative chemistry, genomics, protein design, and biomarker discovery as ready-to-call tools.

47 skills

Genomics, proteomics, and single-cell analysis (Scanpy, BioPython, pysam, ESM) (38 skills)

38 skills

Quantum computing, geospatial, materials, astronomy, and digital humanities (18 skills)

18 skills

Chemistry and drug discovery (RDKit, docking, ADMET, mass spec) (12 skills)

12 skills

Progressive-disclosure workflows for the power-system software exposed by PowerMCP: ANDES, Egret, LTSpice, OpenDSS, PSLF, PSS/E, PowerWorld, PyPSA, pandapower, and surge, plus potpourri for AC/DC and multi-period optimal power flow on pandapower distribution grids. Each skill exposes load, inspect, solve, modify, then advanced studies, and escalates to the powerskills-engineering playbooks when a study finds a real problem.

11 skills

Senior power-engineer mitigation playbooks: voltage violations, thermal overloads, contingency (N-1/N-2) findings, dynamic-stability problems, operations/planning infeasibilities, convergence failures, short-circuit duty, frequency response, interconnection impacts, and DER hosting capacity. Issue-driven, software-agnostic, and triggered from the escalation tables in the powerskills-tool skills.

10 skills

TI-Toolbox for AI agents: skills (usage, scripting API, domain, codebase, running pipelines) + MCP servers (read-only wiki/source/project reader; job driver for the running app).

6 skills · 2 MCP servers

Scientific Reliability Layer for AI-Assisted Biology. Know what your evidence actually warrants: pre-submission shadow review of multi-donor single-cell differential expression, evidence gap location, and human scientific review support.

10 skills · 1 MCP server

Run computational chemistry and structural biology calculations through Rowan MCP tools or rowan-python

1 skill

Nuclear-physics research skills for coding agents: drive FRESCO, TALYS, KSHELL, SMASH and 16 more public codes from a verified input against a stated benchmark, pull EXFOR data, verify citations, and search a 61k-paper offline nucl-th knowledge base.

29 skills · hooks

Teaches agents to run differential expression analysis with delnx: method choice, pseudobulk NB, contrasts, markers, and plots

1 skill

MDClaw skills and CLI tools for preparing systems, running MD, analyzing trajectories, and packaging atomistic evidence

14 skills · hooks

Skills for omics pipelines, literature discovery, and data visualization.

12 skills · 1 agent

Measure porosity, pore size/shape, lattice period and ordering (psi6, Voronoi coordination, radial g(r) and orientational correlation length) from top-view SEM images of porous films such as anodic aluminium oxide. The agent reads the image to calibrate and crop; a Python core does the morphometry and flags results that contradict physics. Vision decides, Python computes — no hardcoded autodetect, so it adapts to different instruments and scale-bar formats.

1 skill

Neutral Atom Toolkit — the full QPU pipeline: application-to-idea, idea-to-spec, spec-to-sequence, validate-emu, noise-emulate (local / SLURM / cloud), qpu-submit (cloud API), submit-to-cea (cluster over SSH), harvest-and-analyze. Plus access: create-pasqal-cloud-account, apply-genci-tgcc-cea, choose-access-method.

11 skills

Search PubChem by chemical structure: a local similarity and substructure index, live PubChem data (names, CAS numbers, safety, pharmacology, bioassays) and RDKit chemistry, through the pubchem-finder MCP server.

1 MCP server

CASA data reduction for radio interferometers (VLA, MeerKAT, uGMRT): 54 MCP tools, interferometrist skills, and inspect/precal/calibrate/polcal/image workflows

5 skills · 3 MCP servers · hooks

Drive the KAME instrument-control application over MCP, with the instrument-safety rules loaded up front.

1 skill · 1 MCP server

Search the academic literature, save papers to your Paperpile library, read and annotate their full text, and keep the library organised.

9 skills · 1 MCP server

Atmospheric science skills for research-project design, data acquisition, scientific analysis, publication-ready figures, stage-result presentations, and model diagnostics.

6 skills

Add an external QM program as a SCINE calculator — C++ scine_utilities and Python scine_puffin.

2 skills · 8 agents

Integrate a new ML model or interatomic potential into scine_parrot.

2 skills · 8 agents

Query CAAIL when choosing tools, datasets or databases for a cell-ag experiment or pipeline, or when asking what AI work exists in cultivated meat and alternative protein. Static JSON, nothing to install or authenticate.

1 skill

Offers to suggest a paper, tool, dataset or database back to CAAIL when it turns out the library does not index it. Composes a prefilled GitHub issue for you to review and submit; it never files anything itself. Separate from the caail plugin so installing it is the consent, and removing it leaves querying intact.

1 skill

Score the oral drug-likeness of molecules from SMILES with the HADES ensemble (local MCP server)

1 MCP server

Scientific computing, HPC, simulation, and data analysis workflows

149 skills · 4 commands · 13 agents · hooks

REINVENT4 molecular design as MCP tools — sampling, transfer learning, and staged RL with interactive scoring-function design — plus skills for validation, job status, analysis, and custom scoring components. Requires a locally built GPU Docker container (see README).

7 skills · 1 MCP server

Author Faunus YAML input files and build, run, profile, and debug Faunus molecular simulations.

2 skills

Fetch METARs, TAFs, PIREPs, domestic/international SIGMETs and CWAs from NWS AWC via MCP. AIRMETs not served. STDIO or Streamable HTTP.

35 skills · 1 MCP server