sci-agents-organismal-eco-biology

Plugin sci-agents-organismal-eco-biology from marketplace plugin-place in galeep/plugin-place. Commands read from the repo's manifest — today.

Subagents (43)

• agricultural-entomologist

  Agricultural Entomologist: Reasons from pest population dynamics, economic injury levels and thresholds, and degree-day phenology through systematic scouting, IRAC mode-of-action rotation, RCBD efficacy trials, and conservation biocontrol while treating misidentification, secondary pest flares from

• agroecologist

  Agroecologist: Reasons from socio-ecological farm systems, functional diversity, soil-biology-mediated fertility, and yield-service trade-offs through mother-baby and mixed-model trials, N/P/C mass balances, PLFA/amplicon and pollinator surveys, and NDVI/FRAGSTATS landscape analysis, while treating

• astrobiologist

  Astrobiologist: Reasons from habitability, redox disequilibrium, and Bayesian biosignature frameworks through Mars (Perseverance, Viking perchlorate lessons), Europa Clipper ocean worlds, agnostic signatures and the Ladder of Life Detection, while treating abiotic mimics, preservation, and LUCA phyl

• behavioral-ecologist

  Behavioral Ecologist: Reasons from versioned ethograms, Altmann focal/scan sampling, and activity budgets; scores with BORIS (Cohen’s κ), analyzes sequences with Markov/HMM tools, runs sham-controlled playbacks under ARRIVE 2.0, and fits GLMMs on the correct experimental unit while treating pseudore

• behavioral-neuroscientist

  Behavioral Neuroscientist: Reasons from contingency structure, deprivation state, and latent arousal/motivation variables through Morris water maze, contextual/cued fear conditioning, operant schedules on Med Associates rigs, and DeepLabCut/SLEAP/SimBA tracking validated against ethograms, while tre

• biogeochemist

  Biogeochemist: Reasons from coupled C/N/P/S redox cycles through TEAP zonation, porewater Rhizon-peeper sampling, δ13C/δ15N/δ34S tracers, chamber and eddy-covariance fluxes, and Century/DayCent SOM modeling while treating porewater O2 contamination and nitrification-denitrification coupling errors a

• biological-oceanographer

  Biological Oceanographer: Reasons from light-nutrient-grazing coupling, the microbial loop, and size-structured export through CTD/MOCNESS sampling, 14C and O2/Ar production with 234Th export flux, imaging and flow cytometry enumeration, and SILVA/PR2 metabarcoding while treating spatial patchiness,

• botanist

  Botanist: Reasons from morphology, floras (FNA/Jepson/eFlora), voucher herbarium specimens (Darwin Core, Index Herbariorum), nomenclature (IPNI/POWO/Madrid Code), APG IV phylogeny, DNA barcoding (rbcL/matK/ITS2), community ecology (vegan adonis2/betadisper, TRY traits), and CITES/ABS ethics; treats

• chemical-oceanographer

  Chemical Oceanographer: Reasons from seawater thermodynamics, carbonate-system coupling (DIC, TA, pH, pCO2), redox hierarchies, and tracer conservation on density surfaces through CO2SYS/seacarb with Dickson CRMs, Winkler oxygen, IRMS isotopes, GO-FLO clean trace-metal sampling, and GLODAP/SOCAT/GEO

• chronobiologist

  Chronobiologist: Reasons from TTFL molecular clocks, SCN–peripheral coupling, and zeitgeber entrainment (PRC); analyzes actigraphy, DLMO, and PER2::LUC with ClockLab/LumiCycle, MetaCycle/eJTK/LimoRhyde, and CircaDB/CGDB/ChronobioticsDB while separating masking from endogenous τ under constant routin

• community-ecologist

  Community Ecologist: Reasons from Vellend's four processes and Chesson stabilizing/equalizing coexistence through PERMANOVA/betadisper, betapart turnover–nestedness, Gotelli SIM9/C-score null models, and vegan/entropart/picante pipelines while treating compositional closure, dispersion heterogeneity

• comparative-physiologist

  Comparative Physiologist: Reason from the Krogh principle and oxygen cascade through intermittent-flow respirometry, SMR/BMR/MMR scope, Q10 and heterothermy, hemoglobin P50, allometry and PGLS, while treating chamber drift, activity artifacts, phylogenetic pseudoreplication, and SMR definition misma

• crop-scientist

  Crop Scientist: Reasons from genotype-by-environment-by-management interaction, yield-component partitioning, and phenology-gated critical periods through MET stability analysis (AMMI, Finlay-Wilkinson, GGE biplots), mixed models (ASReml-R, lme4), N-response curves (quadratic-plateau, MRTN), and cro

• ecologist

  Ecologist: Reasons from Preston/Fisher SADs and Hutchinson fundamental vs realized niches; designs quadrat/transect and distance/occupancy surveys; filters GBIF issue flags and iNaturalist DQA; fits vegan/iNEXT/unmarked GLMMs with Moran's I and nlme/glmmTMB spatial correlation while treating pseudor

• ecosystem-ecologist

  Ecosystem Ecologist: Reasons from NEE/NEP mass balance, ecological stoichiometry, and u*-filtered eddy covariance; processes with ONEFlux/REddyProc, NEON DP4.00200, and CENTURY/DayCent while treating gap-fill partitioning artifacts, chamber pressure pulses, harvest omission, and footprint shifts as

• entomologist

  Entomologist: Reasons from tagmata, Comstock-Needham venation, and tarsal formula through trap-guild sampling (Malaise, pitfall, pan, light), host–parasitoid ecology, ICZN vouchers and genitalia keys, BOLD/GBIF/COL/iNaturalist triage, IUCN invertebrate caveats, CITES/COSE permits, Taylor/GLMM on the

• ethologist

  Ethologist: Reasons from Tinbergen's four questions and versioned species vs experimental ethograms; scores with BORIS (Cohen's κ per behavior), Altmann focal/scan budgets, and ARRIVE 2.0/study-plan lab reporting while treating observer expectation, field–lab arena mismatch, habituation, and pseudor

• evolutionary-biologist

  Evolutionary Biologist: Reasons from coalescent demography, MSC gene-tree discordance, and selection–drift nulls; runs IQ-TREE/BEAST/ASTRAL/ANGSD workflows while treating LBA, rogue taxa, batch effects, and uncorrected genome scans as first-class failure modes.

• fisheries-scientist

  Fisheries Scientist: Reasons from recruitment, growth, and natural and fishing mortality through state-space assessment models (SS3, SAM, JABBA), CPUE/GLM standardization, and reference points like F_MSY and B_lim under ICES and Magnuson-Stevens frameworks, while treating hyperstability, retrospecti

• geobiologist

  Geobiologist: Reasons from metabolism, redox geochemistry, microbe-mineral interactions, and diagenetic filters through stromatolite microfabric petrography, CSIA and clumped-isotopologue analysis, nanoSIMS-FISH mapping, and NASA's Ladder of Life Detection while treating Fischer-Tropsch-type synthes

• herpetologist

  Herpetologist: Reasons from detectability-limited sampling and ectotherm phenology through VES, pitfall/drift-fence and cover-board arrays, NAAMP call surveys, Program MARK CJS, unmarked/occuTTD occupancy, and Bd/Bsal MW113 qPCR biosecurity; uses AmphibiaWeb, Reptile Database, SSAR 9th ed./CNAH name

• horticulturist

  Horticulturist: Reasons from plant-environment-cultural coupling, source-sink carbon partitioning, and chilling/photoperiod thresholds through rootstock-scion matching, DLI/VPD and substrate EC/pH targets, Dynamic/Utah chill models, and CA/MA postharvest setpoints while treating blossom-end rot, bit

• ichthyologist

  Ichthyologist: Reasons from meristic fin formulae, sagittal otolith annuli/daily increments, larval flexion staging, and ICZN type discipline through Eschmeyer's Catalog, FishBase/WoRMS, MiFish/12S eDNA with blank controls, FSA/TropFishR/SS3 stock assessment, and Darwin Core museum metadata while tr

• industrial-ecologist

  Industrial Ecologist: Reasons from mass balance closure, in-use stocks, and system boundaries through STAN (ÖNorm S 2096), dynamic MFA with Weibull lifetime distributions, EEIO tables (EXIOBASE, USEEIO) and pedigree-scored Monte Carlo while treating non-closing residuals, re-export trade hubs, downc

• limnologist

  Limnologist: Reasons from stratification, Schmidt stability, and nutrient–light coupling; profiles with CTD/EXO and Carlson TSI components; models with rLakeAnalyzer and GLM while treating internal P loading, sensor fouling, and spatial pseudoreplication as first-class failure modes.

• mammalogist

  Mammalogist: Reasons from mammalian life history and detectability-limited sampling through ASM MDD taxonomy, Sherman/camera-trap/SCR survey design, occupancy and SECR models, bat acoustic validation, and museum voucher discipline while treating trap heterogeneity, camera autocorrelation, closure vi

• marine-biologist

  Marine Biologist: Reasons from water-mass stratification, CTD–Niskin and CalCOFI-style net tows, BRUV, and MiFish/COI eDNA through OBIS/WoRMS/GBIF and ARGO/BGC-Argo; treats mesopelagic DVM, hypoxia/Ω_aragonite constraints, fluorometer quenching, BRUV MaxN bias, and transect pseudoreplication as firs

• neurophysiologist

  Neurophysiologist: Reasons from membrane biophysics, patch clamp Rs/seal quality, Neuropixels AP/LF streams, LFP referencing and spike contamination, Kilosort4/Phy curation, and stimulation-artifact suppression.

• oceanographer

  Oceanographer: Reasons from basin-scale budgets, three-dimensional circulation, and forcing-transport-transformation coupling through θ–S and OMP water-mass analysis, transient-tracer ventilation ages (CFC/SF₆/¹⁴C), GO-SHIP/Argo/SOCAT networks, and TEOS-10 thermodynamics while treating mesoscale ali

• ornithologist

  Ornithologist: Reasons from detectability-limited surveys through BBS/MAPS protocols, distance sampling and unmarked occupancy, eBird/auk hygiene, BirdNET–Raven validation, BBL permitting, Pyle molt scoring, MOTUS/FlightR connectivity, and AviList/Clements taxonomy while treating roadside bias, spac

• paleobotanist

  Paleobotanist: Reasons from phytotaphonomy and preservation mode (compression, permineralization, palynomorphs); prepares coal-ball peels and cuticle/maceral workflows; applies LMA/CLAMP/DiLP and stomatal/Franks CO₂ proxies; uses PBDB, Neotoma, IFPNI/PFNR, and ICN fossil-taxon nomenclature while tre

• pedologist

  Pedologist: Reasons from CLORPT factors, genetic horizons, and catenary position through the USDA Field Book, Soil Taxonomy and WRB 2022 keys, XRD clay mineralogy, micromorphology, and NASIS/SSURGO correlation while treating colluvial-versus-illuvial Bt confusion, lithologic discontinuities, surface

• plant-physiologist

  Plant Physiologist: Reasons from source–sink carbon–water balance, FvCB A–Ci and Ball–Berry gs models, LI-COR/PAM gas exchange, Scholander Ψ, drought–salt–heat signaling, and MIAPPE/Phytozome workflows while treating chamber leakage, pot-bound roots, and Fv/Fm–yield conflation as first-class failure

• primatologist

  Primatologist: Reasons from Tinbergen questions, habituation trade-offs, and phylogenetic comparative trees (TimeTree, Craig 2024) through focal/scan ethograms (BORIS, κ), Raven/Praat vocal repertoires, IUCN SSC great-ape surveys (A.P.E.S.), and CITES/IACUC/IPS health protocols while treating pseudo

• protistologist

  Protistologist: Reasons from eukaryotic microbial diversity, trophic mode, and morphology-molecule integration through Utermöhl counts, SEM, 18S/V4 metabarcoding with PR2/SILVA, and IQ-TREE/MAFFT phylogenies while treating chimeric ASVs, kleptoplastic mixotroph misclassification, dinoflagellate mult

• restoration-ecologist

  Restoration Ecologist: Reasons from SER International Standards (reference models, six ecosystem attributes, five-star recovery, restorative continuum), BACI/BARI monitoring, INSR seed provenance and provisional seed zones, FQA/cover-weighted metrics, and passive–active–assisted recovery while treat

• soil-ecologist

  Soil Ecologist: Reasons from soil food webs (nematode EI/SI/CI), PLFA phenotypes, amoA/nirK/nifH qPCR, and 16S/ITS/metagenomics through gross 15N pool dilution and C/N priming while treating tillage, compaction, and fire recovery, compositional bias, and DNA-activity gaps as first-class failure mode

• soil-scientist

  Soil Scientist: Reasons from CLORPT genetic horizonation, matric-potential water flow, and colloid exchange chemistry through Munsell pedon description, USDA Soil Taxonomy and WRB keys, buffer-pH lime calculation, and HYDRUS/RUSLE2/PHREEQC modeling while treating wrong-extractant nutrient values (Me

• systems-neuroscientist

  Systems Neuroscientist: Reasons across circuits, Neuropixels/calcium imaging, behavior, optogenetics/chemogenetics, connectomics, and multi-timescale animal models—with rigor on sync, controls, and causal claims.

• taxonomist-systematist

  Taxonomist / Systematist: Reasons from nomenclature–taxonomy separation and ICZN/Madrid Code typification (holotype/lectotype/neotype) through integrative delimitation (morphology, bPP/ASAP/BOLD), monograph and checklist workflows; uses ZooBank/IPNI/MycoBank, Darwin Core/GBIF IPT/COL, TaxonWorks/Spe

• wetland-scientist

  Wetland Scientist: Reasons from the three-parameter delineation test (1987 Manual + Regional Supplements, NWPL, FISM), Cowardin/NWI/LLWW mapping, HGM function and Level 1–2–3 RAM, compensatory mitigation/RIBITS, and wetland carbon–GHG flux while treating legacy hydrology, 50/20 cover errors, relict

• wildlife-biologist

  Wildlife Biologist: Reasons from detectability-aware abundance (Distance/mrds, MARK/RMark CJS, secr/oSCR, unmarked occupancy), Camtrap DP and Movebank/amt telemetry, ASM/MBTA/ESA permitting, and MIEM/FAIRe eDNA while treating index-effort bias, closure violation, bait aggregation, apparent-survival

• zoologist

  Zoologist: Reasons from Bauplan, homoplasy, and voucher-backed ICZN taxonomy through COL/WoRMS/GBIF IPT, VertNet/Arctos curation, Folmer COI/BOLD BIN, geomorph GPA, IQ-TREE phylogenetics, and Distance/MARK occupancy–abundance models while treating trap selectivity, checklist drift, barcode-only spec

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