claudecodex

research-docs

Deep research, scientific databases, literature review, docs, ADRs, a teach-me tutor, rederive (which teaches a codebase by making you design it yourself) and Graphify (a queryable knowledge graph of a project).

5 on GitHubby siddu1004v3.20.0MITupdated 4 days agoskills
/

Plugin research-docs from marketplace sfp in siddu1004/SFP. Commands read from the repo's manifest — 4 days ago.

What it installs

Skills (40)

  • architecture-decision-records

    Capture architectural decisions as numbered ADR markdown files in docs/adr/ with context, alternatives considered, consequences, and an index README. Use when the user says 'record this decision' or 'ADR this', chooses between frameworks or databases, discusses trade-offs, or asks why the codebase i

  • brownfield-retrospective

    Run the ECC engineering process retroactively against an existing project slice. Audit current state, reconstruct past decisions, produce a four-axis gap register (thinking, coding practice, missing features, technology selection), then execute fixes forward through the plan-TDD-review pipeline. Use

  • code-tour

    Create CodeTour `.tour` files — persona-targeted, step-by-step walkthroughs with real file and line anchors. Use for onboarding tours, architecture walkthroughs, PR tours, RCA tours, and structured "explain how this works" requests. Use when the user asks for a code tour, onboarding walkthrough, PR

  • codebase-memory-mcp

    Connect persistent local code intelligence and architectural dependency graphs using Codebase Memory MCP. Use when exploring complex codebases, querying architectural relationships, or maintaining cross-session code context.

  • codebase-onboarding

    Analyze an unfamiliar codebase and generate a structured onboarding guide with architecture map, key entry points, conventions, and a starter CLAUDE.md. Use when joining a new project or setting up Claude Code for the first time in a repo.

  • deep-research

    Produce cited research reports from multiple web sources using firecrawl and exa MCP tools — plan sub-questions, search and deep-read sources, then synthesize findings with inline citations and confidence levels. Use when the user asks to research a topic in depth, run a deep dive or investigation,

  • defuddle

    Extract clean Markdown from HTML pages with Defuddle CLI.

  • docs-governance

    Route broad documentation-governance requests to existing ECC skills and run an opt-in, read-only audit of mapped documentation roles, links, ADR indexes, and evidence references. Use when a user asks for documentation governance, project-knowledge organization, documentation integrity, or a determi

  • documentation-lookup

    Use up-to-date library and framework docs via Context7 MCP instead of training data. Activates for setup questions, API references, code examples, or when the user names a framework (e.g. React, Next.js, Prisma).

  • graphify

    Use for any question about a codebase, its architecture, file relationships, or project content — especially when graphify-out/ exists, where the question should be treated as a graphify query first. Turns any input (code, docs, papers, images, videos) into a persistent knowledge graph with god node

  • json-canvas

    Create and edit JSON Canvas files (.canvas) with nodes, edges, groups, and connections. Use when working with .canvas files, creating visual canvases, mind maps, flowcharts, or when the user mentions Canvas files in Obsidian.

  • knap

    Render Markdown from templates and structured data using Knap CLI. Use when the user asks to apply a Knap template, turn JSON or CSV data into notes, batch-generate Markdown files, or format Defuddle output into a note.

  • knowledge-ops

    Knowledge base management, ingestion, sync, and retrieval across multiple storage layers (local files, MCP memory, vector stores, Git repos). Use when the user wants to save, organize, sync, deduplicate, or search across their knowledge systems.

  • living-docs-governance

    Keep a long-lived project's documentation from rotting by assigning existing project docs clear constitution, map, status, and history roles, then wiring the active agent harness to those canonical sources. Use in the maintain phase when docs drift from code, agents lose context between sessions, or

  • notebooklm

    Install, authenticate, troubleshoot, and operate Gemini Notebook through the notebooklm-py CLI or typed async Python API. Use for notebook and source management, grounded chat and research, and artifact generation or download when the user mentions Gemini Notebook, notebooklm-py, the notebooklm CLI,

  • nutrient-document-processing

    Process, convert, OCR, extract, redact, sign, and fill documents using the Nutrient DWS API. Works with PDFs, DOCX, XLSX, PPTX, HTML, and images. Use when converting, OCRing, extracting from, redacting, signing, or filling documents via the Nutrient DWS API.

  • obsidian-bases

    Create and edit Obsidian Bases (.base files) with views, filters, formulas, and summaries. Use when working with .base files, creating database-like views of notes, or when the user mentions Bases, table views, card views, filters, or formulas in Obsidian.

  • obsidian-cli

    Interact with Obsidian vaults using the Obsidian CLI to read, create, search, and manage notes, tasks, properties, and more. Also supports plugin and theme development with commands to reload plugins, run JavaScript, capture errors, take screenshots, and inspect the DOM. Use when the user asks to in

  • obsidian-markdown

    Create and edit Obsidian Flavored Markdown with wikilinks, embeds, callouts, properties, and other Obsidian-specific syntax. Use when working with .md files in Obsidian, or when the user mentions wikilinks, callouts, frontmatter, tags, embeds, or Obsidian notes.

  • rederive

    Teaches a codebase by making the user re-derive its design decisions from first principles through Socratic questions, instead of explaining the code. Works on the user's own repo or any open source repo (local path or git URL). Use when the user runs /rederive, wants to explain a project they built

  • research-ops

    Evidence-first current-state research workflow for ECC. Use when the user wants fresh facts, comparisons, enrichment, or a recommendation built from current public evidence and any supplied local context.

  • scientific-db-pubmed-database

    Direct PubMed and NCBI E-utilities search workflows for biomedical literature, MeSH queries, PMID lookup, citation retrieval, and API-backed literature monitoring. Use when a task needs biomedical literature from PubMed rather than general web search.

  • scientific-db-uspto-database

    USPTO patent and trademark data workflow for official record lookup, PatentSearch queries, TSDR checks, assignment data, and reproducible IP research logs. Use when a task needs official United States patent or trademark records from USPTO systems.

  • scientific-pkg-gget

    gget CLI and Python workflow for quick genomic database queries, sequence lookup, BLAST-style searches, enrichment checks, and reproducible bioinformatics evidence logs. Use when a task needs quick bioinformatics lookup across genomic reference databases with the gget CLI or Python package.

  • scientific-thinking-literature-review

    Systematic literature-review workflow for academic, biomedical, technical, and scientific topics, including search planning, source screening, synthesis, citation checks, and evidence logging. Use when the task is to find, screen, synthesize, and cite a body of academic or technical literature.

  • scientific-thinking-scholar-evaluation

    Structured scholarly-work evaluation for papers, proposals, literature reviews, methods sections, evidence quality, citation support, and research-writing feedback. Use when evaluating academic or scientific work — papers, proposals, methods sections, or evidence quality — against a repeatable rubri

  • searxng

    Configure and query a private SearXNG metasearch instance to retrieve web search results without commercial tracking. Use when conducting private web research, aggregating search engines, or bypassing web search rate limits.

  • story-lifecycle

    Manage a file-based epic → story → sprint development loop without requiring an external project management tool. Creates and tracks epics, breaks them into user stories, assigns them to sprints, and drives implementation story by story. Use when starting a new feature initiative or when the team ha

  • teach-me

    Teach adaptively from learner goals or authorized sources, or help educators prepare lessons, in English or simplified Modern Standard Arabic. Use for learning, practice, review, or getting unstuck.

  • understand-chat

    Use when you need to ask questions about a codebase or understand code using a knowledge graph

  • understand-dashboard

    Launch the interactive web dashboard to visualize a codebase's knowledge graph

  • understand-diff

    Use when you need to analyze git diffs or pull requests to understand what changed, affected components, and risks

  • understand-domain

    Extract business domain knowledge from a codebase and generate an interactive domain flow graph. Works standalone (lightweight scan) or derives from an existing /understand knowledge graph.

  • understand-explain

    Use when you need a deep-dive explanation of a specific file, function, or module in the codebase

  • understand-figma

    Analyze a Figma file via the Figma REST API and generate an interactive design knowledge graph (pages, screens, components, component sets, instances, design tokens) with a kind:"design" dashboard.

  • understand-knowledge

    Analyze a Karpathy-pattern LLM wiki knowledge base and generate an interactive knowledge graph with entity extraction, implicit relationships, and topic clustering.

  • understand-onboard

    Use when you need to generate an onboarding guide for new team members joining a project

  • understand

    Analyze a codebase to produce an interactive knowledge graph for understanding architecture, components, and relationships

  • vibewise-learn

    Activate or resume learning-first development. You lead the design; Claude gives feedback, explains concepts, asks follow-ups, and writes the agreed code.

  • vibewise-reset

    Back up this project's learning notes and restart onboarding after confirmation. Does not reset application code.

View source on GitHub npmjs.com

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