compbio
claudeComputational biology — perturbation analysis, single-cell, spatial omics, databases, project continuity
38 skills
Core utilities — skill authoring, security, scientific ideation and coding governance
Plugin core from marketplace ai-skills in CHENyiru3/AI-Skills-Collections. Commands read from the repo's manifest — 3 days ago.
skill-creatorCreate or update a self-contained agent skill, design requested skill evaluations, or improve trigger precision. Use for a reusable SKILL.md workflow; for audit-only trimming use skill-cutter.
skill-cutterCritically audit or explicitly trim an existing agent skill to its behavioral core, including narrowing over-broad trigger metadata. Use when the user asks to cut, simplify, shorten, de-slop, or reduce the context cost or trigger aggressiveness of a SKILL.md or skill folder. Do not trigger merely be
scientific-brainstormingGenerate, challenge, or compare candidate scientific research directions with explicit assumptions and evidence limits. Use for requested ideation or prioritization; not hypothesis validation, clinical advice, or permission to run experiments.
scientific-coding-governancePreserve scientific intent and meaningful results while implementing or debugging research analyses within an agreed scope. Use when code can affect methods, data, evaluation, or interpretation; not as an approval ritual for unrelated mechanical edits.
auditing-python-securityAudit Python source, dependency vulnerabilities or secret exposure, or implement requested security checks. Use for an explicit Python security review or hardening task; ordinary code edits do not require a full audit.
Computational biology — perturbation analysis, single-cell, spatial omics, databases, project continuity
38 skills
Document processing — OfficeCLI, Excel, Word, PowerPoint, PDF, web design, and collaboration
20 skills
AI/ML — VI methodology, PyTorch, Transformers, PEFT, TRL, distributed training
14 skills
Academic writing, literature review, Marp presentations, LaTeX, Obsidian, and knowledge management
14 skills
Python library development — project setup, testing, packaging, performance, security, API design
13 skills
Platform integrations — GitHub workflows and Google Workspace CLI/Drive transfers
10 skills
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