compbio
claudeComputational biology — perturbation analysis, single-cell, spatial omics, databases, project continuity
38 skills
Python library development — project setup, testing, packaging, performance, security, API design
Plugin programming from marketplace ai-skills in CHENyiru3/AI-Skills-Collections. Commands read from the repo's manifest — 3 days ago.
designing-python-apisDesign or review a public Python package API: signatures, return/error contracts, naming and compatibility. Use for explicit interface design or deprecation work; not every internal function edit.
building-python-clisCreate, change or test a Python command-line interface, including arguments, streams and exit behavior. Use for Python CLI development with the chosen framework; not merely running a command-line tool.
improving-python-code-qualityFix Python lint/type-checking problems or perform a requested focused maintainability refactor. Use the project’s configured tools and supported Python versions; not a mandatory reconfiguration for every Python edit.
building-python-communitiesCreate or revise Python project contribution, governance, issue/PR templates or maintainer workflows. Use for explicit contributor-experience work; not ordinary code fixes or automatic GitHub messaging.
documenting-python-librariesWrite or repair Python package docstrings, usage guides, API references or documentation builds. Use for an explicit package documentation task; a product mention alone does not require Sphinx or deployment setup.
jupyterInspect, edit, execute or convert a Jupyter .ipynb artifact when notebook-specific cell, output or metadata handling is needed. Reading/editing does not imply executing cells or overwriting the source notebook.
reviewing-python-librariesAssess a Python package for adoption, maintenance or release readiness and report evidence-backed engineering risks. Use for a requested library audit; not a demand to run arbitrary tests or redesign a package during inspection.
packaging-python-librariesBuild, inspect or repair an installable Python distribution: metadata, wheels, source archives and package data. Use for packaging work; publication to an index requires that requested scope, and an unrelated pyproject edit does not trigger this workflow.
optimizing-python-performanceProfile and improve Python CPU, memory or throughput behavior using representative measurements. Use for an explicit performance investigation or optimization; not mandatory benchmarking for an unrelated edit.
setting-up-python-librariesScaffold a new Python library or modernize its package structure and selected tooling. Use for explicit setup work; preserve an existing project’s backend, Python support and conventions unless migration is requested.
managing-python-releasesPrepare a Python package version/changelog or perform an explicitly requested release. Use for release planning, deprecations and publication workflows; local preparation alone does not authorize tagging, pushing or uploading.
SQLiteDesign or repair SQLite transactions, concurrency, schema changes, query plans or backups. Use for SQLite-specific behavior and integrity questions; not a blanket migration recommendation for every web application.
testing-python-librariesDesign or repair meaningful pytest tests for a Python package, including fixtures, parametrization or property checks. Use for a requested test strategy or regression case; not mandatory coverage infrastructure for every reversible edit.
Computational biology — perturbation analysis, single-cell, spatial omics, databases, project continuity
38 skills
Document processing — OfficeCLI, Excel, Word, PowerPoint, PDF, web design, and collaboration
20 skills
AI/ML — VI methodology, PyTorch, Transformers, PEFT, TRL, distributed training
14 skills
Academic writing, literature review, Marp presentations, LaTeX, Obsidian, and knowledge management
14 skills
Platform integrations — GitHub workflows and Google Workspace CLI/Drive transfers
10 skills
Coding agents — Claude Code, Codex, MCP, handoffs, engineering guidelines
8 skills
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