compbio
claudeComputational biology — perturbation analysis, single-cell, spatial omics, databases, project continuity
38 skills
Academic writing, literature review, Marp presentations, LaTeX, Obsidian, and knowledge management
Plugin writing from marketplace ai-skills in CHENyiru3/AI-Skills-Collections. Commands read from the repo's manifest — 3 days ago.
academic-writing-editorEdit or critique bioinformatics/computational biology manuscript prose for scientific precision and argument flow. Use for draft sections or figure legends; preserve evidence and genre conventions rather than enforcing one paragraph template.
humanizer-zh在用户要求中文去AI味、自然化改写,或原文明显套话堆叠时,调整表达和节奏,保留事实、语体与作者声音。不用于默认改写所有中文,也不以添加经历、功能或证据来制造真实感。
humanizerClean up prose that sounds robotic, generic, corporate or unlike the user’s voice, especially when the user requests humanizing or removal of AI tells. Preserve meaning/register; not a general writing default or a mandatory full academic edit.
latexCompile or troubleshoot an existing LaTeX project and verify its PDF, logs and references. Use for an explicit TeX build task; not creating a new paper template, renaming bibliographies or changing global editor settings.
latex-writingAuthor or review LaTeX source for semantic structure, equations, references and class-compatible markup. Use for .tex work or LaTeX portions of noweb .nw files; not every academic writing task or a mandatory package/style migration.
zotpilotSearch or organize a Zotero library through existing ZotPilot/Zotero tools, or configure ZotPilot when explicitly requested. Use for library-specific access; not every paper, citation or literature-writing task, and not automatic installation/indexing.
defuddleExtract a clutter-reduced Markdown representation of a standard HTML page using Defuddle when that extraction is requested or useful. Not a universal replacement for connected/browser access, authenticated pages or raw Markdown URLs.
json-canvasCreate or edit a JSON Canvas .canvas artifact with nodes, edges and layout. Use for an actual canvas file or explicit JSON Canvas workflow; not generic illustrations, HTML canvas code or automatic public image uploads.
obsidian-basesCreate or edit an Obsidian .base file with scoped filters, formulas and views. Use for Bases artifacts; not ordinary note properties, generic tabular analysis or automatic image hosting.
obsidian-cliUse a configured Obsidian CLI for a requested vault operation or Obsidian plugin/theme debugging. Target an explicit vault/file; not a requirement to launch the app or use CLI for every local Markdown edit.
obsidian-markdownCreate or edit Obsidian-specific Markdown links, embeds, callouts or properties in a vault note. Use when these extensions matter; not ordinary Markdown outside a vault or a requirement to add metadata/callouts to every note.
wiki-keeperQuery, ingest, reorganize or lint a Markdown wiki/Obsidian vault while preserving its schema, canonical pages and links. Ordinary queries are read-only; index/log/inbox updates follow the actual mutation and vault contract.
duke-nus-marpCreate and edit academic Marp slide decks using the user's Duke-NUS theme and Harvard author–date citations. Use for Duke-NUS Marp presentations, lab meetings, research talks, and requests to apply this saved slide workflow. Not for unrelated PowerPoint editing or changing the user's citation librar
asd-ste100Clarify English instructions, tool descriptions, errors or agent messages when ambiguity has a concrete cost, or when STE/plain-language rewriting is explicitly requested. Not a default style for all dense prose, creative writing or marketing.
Computational biology — perturbation analysis, single-cell, spatial omics, databases, project continuity
38 skills
Document processing — OfficeCLI, Excel, Word, PowerPoint, PDF, web design, and collaboration
20 skills
AI/ML — VI methodology, PyTorch, Transformers, PEFT, TRL, distributed training
14 skills
Python library development — project setup, testing, packaging, performance, security, API design
13 skills
Platform integrations — GitHub workflows and Google Workspace CLI/Drive transfers
10 skills
Coding agents — Claude Code, Codex, MCP, handoffs, engineering guidelines
8 skills
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